I am not getting the exact answer of my question? I am working on GWAS in a diploid plant species with 6000 SNPs and 14 quantitative traits. I am able to get individual SNP contribution to a particular trait, but how to calculate contribution of a set of significant SNPs to a particular trait. I calculated individual SNP contribution to a particular trait but if a number of SNPs contributing to the same trait then how to calculate the combined contribution of SNPs in explaining variation. This paper (http://www.nature.com/ncomms/journal/v2/n9/full/ncomms1467.html (FIGURE 6) done the combined contribution of SNPs to trait. I've almost done all of the analysis like significant SNPs for all of the traits but I am totally confused at this step on SNP contribution to phenotypic variation. Can anyone please help? Thanks,
Question: (Closed) Phenotypic Variation Explained By Snps In Gwas
6.5 years ago by
kumar.vinod81 • 280
kumar.vinod81 • 280 wrote:
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