Question: (Closed) Phenotypic Variation Explained By Snps In Gwas
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gravatar for kumar.vinod81
6.9 years ago by
kumar.vinod81280
New Delhi
kumar.vinod81280 wrote:

I am not getting the exact answer of my question? I am working on GWAS in a diploid plant species with 6000 SNPs and 14 quantitative traits. I am able to get individual SNP contribution to a particular trait, but how to calculate contribution of a set of significant SNPs to a particular trait. I calculated individual SNP contribution to a particular trait but if a number of SNPs contributing to the same trait then how to calculate the combined contribution of SNPs in explaining variation. This paper (http://www.nature.com/ncomms/journal/v2/n9/full/ncomms1467.html (FIGURE 6) done the combined contribution of SNPs to trait. I've almost done all of the analysis like significant SNPs for all of the traits but I am totally confused at this step on SNP contribution to phenotypic variation. Can anyone please help? Thanks,

snp • 5.1k views
ADD COMMENTlink written 6.9 years ago by kumar.vinod81280
1

This question is a duplication of Phenotypic variation explained by SNPs in GWAS, Phenotypic variation explained by SNPs in GWAS and Phenotypic variation explained by SNPs in GWAS question, all asked over the last few days.

You're not getting the exact answer to your question? I'm unclear to what your question is other than "Help me do this?" This forum is a resource with lots of volunteers to help you, so please provide clear information in regards to your direct question.

ADD REPLYlink modified 6.9 years ago by Istvan Albert ♦♦ 81k • written 6.9 years ago by Josh Herr5.7k
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