I was wondering if anyone knew of some python projects for microarray analysis, specifically reading in Affy Cel files. I know about An intuitive Python interface for Bioconductor libraries demonstrates the utility of language translators and the other projects to link R and Python. I'd love a native python project if possible.
I have written a parser in pure python 3, which can deal with Affymetrix CEL files, version 4. This version is difficult to parse, because it's binary and poorly documented. Data produced from Human Exon Chip should be compatible with this parser.
If you're interested in parsing other versions of CEL files, give me a shout and I'll see what I can do :)
Hello Will. I think these link can be useful.