Is there a tool / script already available to filter private SNPs from a multi-sample vcf file? I looked but couldn't find a option in VCF tools.
What I mean with a private SNP is a SNP were an alternative genotype is unique to one sample.
I am also not interested in shared alternative genotypes. So I am not interested in SNPs where multiple samples share a 0/1 or 1/1 or 0/2 or 1/2 etc genotype. Only complete private / unique genotypes.