Question: Mostly Used (Fast) Global Pairwise Alignment Tool
2
gravatar for Pdubois
8.5 years ago by
Pdubois60
Pdubois60 wrote:

I am trying to align contigs to several chromosomes in genome using global alignment (i.e. query and reference files contain multiple fasta entry).

I looked at EMBOSS' needle but it is too slow.

Is there any practical tool for such task?

alignment sequence dna • 4.4k views
ADD COMMENTlink modified 8.5 years ago by Neilfws48k • written 8.5 years ago by Pdubois60
6
gravatar for Neilfws
8.5 years ago by
Neilfws48k
Sydney, Australia
Neilfws48k wrote:

There are lots - here's a Wikipedia list of pairwise alignment software.

I think MUMmer might do what you want.

ADD COMMENTlink written 8.5 years ago by Neilfws48k
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