Entering edit mode
11.2 years ago
Naren
▴
1000
What are different ways (tools or online resources) to find SNPs between Whole Genomes of two Bacterial Strains?
EDIT: Also, how to find out SNPs between their core genes?
Do you mean from a data analysis point of view, experiment / study design point of view.? And why are you asking how that can be useful? If you have no idea how something can be useful (study rationale) then why do you want to do analysis or study on it.
I am given a task as a trainee to find ways and uses of SNPs in Bacteria. So I want to know both ways and uses. And its totally for Analysis purpose as our lab is purely computational.
Then I would suggest that you start reading in scientific papers and if anything is unclear to you, you ask a specific question. To give you a hint, SNPs serve as important genetic markers (is not only for bacteria)
Do you have only the assembled genomes or do you have the genomic reads, as well?
They are assembled. Mostly downloaded from NCBI