Question: Mouse Transcript/Gene Features Db
0
gravatar for Alon Ap
6.8 years ago by
Alon Ap0
Alon Ap0 wrote:

Hello, I'm trying to explain some transcript related phenomenon, and for this i want to collect as many transcript features as possible. This includes simple features such as transcript length, and GC content, but i also want some more elaborate features such as conservation, ChIP data, etc. I've tried the MGI and the Ensemble DBs and i can't seem to find what i need - Ensemble has some of the more elaborate features, but for some reason i can't get it to actually generate the tables i require using biomart (the interesting features such as conservation come back empty).

So my question - is there any resource you know of, that attampts to collect this kind of data? The optimal result for me would be a table indexed by some id (e.g. refseq, ensemble) were each record has a list of features.

Anyway, if you are interested in such a table as well, i'll probably make some approximation of it, so contact me.

Thanks,

gene mouse database • 1.2k views
ADD COMMENTlink written 6.8 years ago by Alon Ap0

If Ensembl has the info but you can't query for it then you should perhaps frame the question in those terms.

ADD REPLYlink written 6.7 years ago by Istvan Albert ♦♦ 81k
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