Question: (Closed) How To Get Reference Sequence From Ucsc Of A Certain Position Of Chromosome?
0
gravatar for Mutant
7.4 years ago by
Mutant10
Mutant10 wrote:

Hello,

I would like to cut certain part of human Y chromosome from reference sequence from UCSC browser.

e.g. I would like to cut from physical position 14000000-15000000. what would be the best and easiest way to do it?

Thanks

genomic position chromosome • 4.3k views
ADD COMMENTlink modified 7.4 years ago by Pierre Lindenbaum129k • written 7.4 years ago by Mutant10

For future reference: it helps to be precise. "Cut" could mean "extract only that region" or "delete that region".

ADD REPLYlink written 7.4 years ago by Neilfws48k
1
gravatar for fo3c
7.4 years ago by
fo3c430
.eu
fo3c430 wrote:

Use the Table Browser , and select

Region -> Position -> your position of interest
Output format -> Sequence

And then "get output" and after a few more options you get the sequence you want.

ADD COMMENTlink written 7.4 years ago by fo3c430
0
gravatar for Pierre Lindenbaum
7.4 years ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum129k wrote:

duplicate of

How to get the sequence of a genomic region from UCSC?

closing.

ADD COMMENTlink modified 7.4 years ago • written 7.4 years ago by Pierre Lindenbaum129k
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