Generating Gene Expression Data With Implanted Biclusters
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Entering edit mode
11.4 years ago
samsara ▴ 630

I have been working on biclustering. I wrote a script to generate gene expression data with implanted clusters, but only with zeros and ones. For example

0    s0    s1    s2    s3    s4    s5    s6    s7    s8    s9    
g0    1    1    0    0    1    1    0    0    0    0    
g1    1    1    0    0    1    1    0    0    0    0    
g2    1    1    0    0    1    1    0    0    0    0    
g3    0    0    0    1    1    1    0    0    0    0    
g4    0    0    0    1    1    1    0    0    0    0    
g5    0    0    0    1    1    0    0    0    0    0    
g6    0    1    1    0    0    0    0    0    0    0    
g7    0    1    1    0    0    0    0    0    0    0    
g8    0    1    1    0    0    0    0    0    0    0    
g9    0    0    0    0    0    0    0    0    0    0

I am wondering if anyone has snippet for generating expression such implanted cluster with real values.

clustering gene-expression • 2.1k views
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Entering edit mode

Sorry, but as it stands this most likely makes no sense. What do you mean by "generated gene expression data"? So you mean simulate? And what is that good for.

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