Question: (Closed) Getting Rsids For 250 Snps
0
gravatar for charleyfarley
6.8 years ago by
United Kingdom
charleyfarley0 wrote:

I have SNPs from the Illumina 2.5M quad chip that are definitely in dbSNP, but for which I only have genome positions (build 37) not RSids. I want the RSids. I'm sure I should be able to do this with Biomart but I just can't work out how!

I'm preferably looking for a way to do this that doesn't need me to be able to use Biomart's Perl API, but all suggestions welcome.

The data looks like this: Chr Name Pos (37) 1 SNP1-61575582 61802994

I can obviously change the way this looks to make it compatible with whatever upload/input format is needed :)

I want output that would tell me both the RSid number and the genome position.

biomart dbsnp • 2.5k views
ADD COMMENTlink modified 6.8 years ago by Pierre Lindenbaum124k • written 6.8 years ago by charleyfarley0
0
gravatar for Pierre Lindenbaum
6.8 years ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum124k wrote:

Duplicate of

SNP rsID by location?

closing.

ADD COMMENTlink written 6.8 years ago by Pierre Lindenbaum124k
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