I don't highly sophisticated computational power to do a MD run in nanoseconds scale. So, i have done a molecular dynamics simulation for 100 ps through which i am able to see which molecule is stable enough and which is not.
But Can i say that 100 ps of small MD run is valid enough to see that the RNA structure i am simulating is stable enough?
Any advise or suggestion?
NOTE: the RNA molecule is 33 nucleotides length