[Edited for clarity]. If you enter a preset option and its dependent parameters in Bowtie or TopHat, which one will override and be implemented? For example, there are the four preset options (fast, very fast, sensitive, very sensitive). So if I run bowtie2 --very sensitive, it will set the following parameters ( -D 20 -R 3 -N 0 -L 20 -i S,1,0.50. ). But what if I enter bowtie2 --very sensitive and -D 10. Which effort option do I get? D= 10 or D = 20?
Question: Presets And Dependent Parameters For Bowtie2/Tophat2
6.1 years ago by
blair • 20
blair • 20 wrote:
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