Question: Genotype Phasing When Using The Beagle Genetic Analysis Software
gravatar for Tim
6.6 years ago by
Tim60 wrote:


can somebody who knows BEAGLE a bit tell me whether you are supposed to phase your samples chromosome by chromosome or can you phase the sample in a single go? Moreover, how many markers do you suggest for BEAGLE - I currently have about 100k and wanted to knwo whether that is sufficient? Does anybody knwo up to which genotyping rate BEAGLE's automatic imputation function works? When do you need a reference panel?

snps • 2.4k views
ADD COMMENTlink modified 6.6 years ago by Alex Reynolds29k • written 6.6 years ago by Tim60
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