Question: Genotype Phasing When Using The Beagle Genetic Analysis Software
1
gravatar for Tim
5.9 years ago by
Tim60
Tim60 wrote:

Hello,

can somebody who knows BEAGLE a bit tell me whether you are supposed to phase your samples chromosome by chromosome or can you phase the sample in a single go? Moreover, how many markers do you suggest for BEAGLE - I currently have about 100k and wanted to knwo whether that is sufficient? Does anybody knwo up to which genotyping rate BEAGLE's automatic imputation function works? When do you need a reference panel?

snps • 2.2k views
ADD COMMENTlink modified 5.9 years ago by Alex Reynolds27k • written 5.9 years ago by Tim60
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2136 users visited in the last hour