Question: Interpolate Genetic Map
1
gravatar for Tim
7.0 years ago by
Tim60
Tim60 wrote:

Hello

I have base pair position and marker identifier and would like to get the position on the genetic map (cM). I tried to do this with an R package called crypticIBDcheck but the installation failed. Do you know of any other way that interpolates automatically without me having to upload them manually to the Rutgers map?

any suggestions welcome

• 2.2k views
ADD COMMENTlink modified 7.0 years ago by Neilfws48k • written 7.0 years ago by Tim60

In what way did the installation of crypticIBDcheck fail? What was the error message?

ADD REPLYlink written 7.0 years ago by Neilfws48k
0
gravatar for ff.cc.cc
7.0 years ago by
ff.cc.cc1.3k
European Union
ff.cc.cc1.3k wrote:

Hi, I faced a similar task last year...

  • downloaded genetic recombination maps from Hapmap (link)

  • then It was quite easy to import them into a database (mysql in my case, but even access do the work well)

  • query the table by position

ADD COMMENTlink written 7.0 years ago by ff.cc.cc1.3k
0
gravatar for Tim
7.0 years ago by
Tim60
Tim60 wrote:

could you be a bit mroe detailed? How would I do this in access?

ADD COMMENTlink written 7.0 years ago by Tim60

-start access -create an empty db -choose the 'external data' menu tab -choose text file -follow the wizard

ADD REPLYlink written 7.0 years ago by ff.cc.cc1.3k
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