Question: Ucsc Human Conservation Scores
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gravatar for Eric
7.2 years ago by
Eric90
Eric90 wrote:

I am using GenomeGraphs and want to plot conservation scores alongside human gene regions. In the vignette, they use yeastCons1. Where would I get the equivalent for human?

Thanks.

conservation human ucsc • 2.8k views
ADD COMMENTlink modified 7.2 years ago by Alex Reynolds30k • written 7.2 years ago by Eric90
0
gravatar for Alex Reynolds
7.2 years ago by
Alex Reynolds30k
Seattle, WA USA
Alex Reynolds30k wrote:

There are three phastCons file sets for hg19, representing three different alignment types: vertebrate, primate and placental mammal.

The vertebrate alignment aligns 45 species against human; the primate and placental mammal align subsets of the vertebrate species to human.

You'll find these in the Comparative Genomics group in the UCSC Genome Browser, under "Conservation".

ADD COMMENTlink written 7.2 years ago by Alex Reynolds30k
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