Question: Where To Find Rnas Used In Gene Expression Studies?
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gravatar for Click downvote
7.3 years ago by
Germany
Click downvote690 wrote:

I have found several datasets that use the transcriptome from the hippocampus in mice and humans. I am very interested in getting the transcriptome from the hippocampus in mice and humans. Some examples are here:

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM107009 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM80664

(You can find more by searching for "hippocampus" in these pdfs: http://molecularbrain.org/datasets/)

Problem is, they never include the actual RNAs or transcriptomes used in the studies, only the gene expression data. Am I overlooking something? Should one be able to find the RNAs or transcriptomes used somewhere on those GEO-pages?

geo rna • 1.9k views
ADD COMMENTlink modified 7.3 years ago by Devon Ryan96k • written 7.3 years ago by Click downvote690
2
gravatar for Devon Ryan
7.3 years ago by
Devon Ryan96k
Freiburg, Germany
Devon Ryan96k wrote:

These are microarray studies, so you'll find the probe information by browsing over to the various GPL (e.g. GPL1261 and GPL570 for the first and second examples, respectively). You may or may not find the actual probe sequences there, it's sort of hit or miss. Often, you have to click over to the vendor's website and then download a datasheet with the actual probe sequences.

ADD COMMENTlink written 7.3 years ago by Devon Ryan96k
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