Entering edit mode
10.9 years ago
Raghav
▴
100
I have a text file which contain fastq ids and another file is my original fastq file which is approx 14GB. Is there any efficient program which could help me to extract fastq seq according to my IDs are like:
@lcl|SRR681003.3 SN603:5:1101:47.10:122.20 length=100
@lcl|SRR681003.14 SN603:5:1101:57.10:114.60 length=100
@lcl|SRR681003.16 SN603:5:1101:72.70:115.10 length=100
@lcl|SRR681003.19 SN603:5:1101:54.80:117.50 length=100
@lcl|SRR681003.22 SN603:5:1101:50.60:119.00 length=100
it is very easy to extract fasta seq for given id by using fastacmd but no idea how to extract fastq files of desire ids
