Question: Accuracy Report
0
gravatar for Noa
5.9 years ago by
Noa50
Noa50 wrote:

Hi!

I am using augustus to predict some genes for a fungi. I am stuck analyzing the GFF outputs. My question is: are there any ready-to-use tools/scripts that parse the GFF files? I would like get the accuracy (sensitivity & specificity ) per feature.

There script that calculates this for me? (to save me some time) I am currently testing augustus by checking the results for yeast, together with the annotated yeast genome.

greetz,

Noa z

gene gff prediction • 1.2k views
ADD COMMENTlink written 5.9 years ago by Noa50

See also How to compare gene models, Genome annotation quality measure

ADD REPLYlink modified 5.9 years ago • written 5.9 years ago by Michael Dondrup46k

thnx. I already checked those. i thought there might be some update on them by now

ADD REPLYlink written 5.9 years ago by Noa50
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