I'm looking for a dataset that can be used to test students' ability to do genotype calling using the Affymetrix Power Tools pipeline.
As such, it should ideally:
- come with known genotypes
- contain more than one ancestral group (for testing ability to find structure etc)
- not be too well known,
..although none of theses are dealbreakers
- the Affy website: only seems to have called genotypes
- The Broad Institute website
- 1000 genomes data server
None of these resources seem to make this sort of dataset available, although they must have them internally. Any advice?
EDIT: To be clear, I'm looking for Axiom data, not SNP6