Edit Distance Computation For All Reads From Ngs

Question

[Alex]

1. Did anyone try to compute a dataset of edit distances (ED) for all pairs of short sequences from NGS? In the simplest case something like that: sequencea, sequenceb, ED

2. What variant of ED definition is better for this?

3. Possible pitfalls?

Answer 1

[lh3]

Perhaps this is what you are asking for.