I'm trying to run:
blastclust -a 48 -p T -d ./uniprot/2011_04/all.fasta -v progress
I have 48 cores on the server thus
-a 48 argument, but only 100% CPU (1 core) is used.
I have Blast2 version 2.2.21 (standard for Debian 6).
This seems to be a bug because parallelism is clearly requested and at least a warning message should be show when proceeding on a single core.
Does anyone know how to workaround this?