Clinvar_20130905 4.1 Version

Question

[Hans]

Where can I find a vcf 4.1 clinvar_.... file; i like to use it with vcf-isec to intersect my 4.1 vcf data. It requires the same version; but the downloaded version from the ncbi.nih.gov site is 4.0. vcf-convert however will not convert it.

Answer 1

[Pierre Lindenbaum]

did you try to convert the VCF using vcf-tools ? http://vcftools.sourceforge.net/perl_module.html#vcf-convert

About: Convert between VCF versions.
Usage: cat in.vcf | vcf-convert [OPTIONS] > out.vcf
Options:
   -r, --refseq <file>              The reference sequence in samtools faindexed fasta file. (Not required with SNPs only.)
   -v, --version <string>           4.0, 4.1
   -h, -?, --help                   This help message.