How To Tell If Bed/Bim/Fam Data Are Phased?
1
0
Entering edit mode
7.8 years ago

For VCF files the rule is "pipe means phased, slash unphased". See A: Phased and unphased genotypes in VCF files: does the order of alleles matter?

Is there such a rule for the bed/bim/fam family of files?

bed • 2.6k views
ADD COMMENT
1
Entering edit mode
7.8 years ago
zx8754 10k

As far as I know, bed/bim/fam is a plink binary format of regular ped/map format, which is not a phased format.

See SHAPEIT for examples of file formats.

ADD COMMENT

Login before adding your answer.

Traffic: 2470 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6