I hava installed blast2go on my local server, but this server do not hava X-window. so i use: java -cp .:mysql-connector-java-5.0.8-bin.jar: ImportIdMapping /your/path/to/idmapping.tb localhost b2gdb blast2go blast4it to run b2g, and it comes a html file as result.
but i've read the manual of b2g, in the GUI mode, it can do a lot more, like Statistical Analysis: Enrichment analysis, Fisher exact test result table, 'enriched' graph, Sequence Distribution/Go as multlevel-Pie.
are there any other command line usage of blast2go can do this jobs?