Question: Find The Second Best Maximum Likelihood Tree
gravatar for figo
6.4 years ago by
figo200 wrote:

Hi All

Generally the phylogentic program gives the best Maximum likelihood tree. Do any one know any program/software which, say gives the top10 best maxim likelihood scores and trees or at least second best maximum likelihood score and tree.


ADD COMMENTlink modified 6.3 years ago by Biostar ♦♦ 20 • written 6.4 years ago by figo200
gravatar for NPalopoli
6.4 years ago by
Argentina/Buenos Aires/Universidad Nacional de Quilmes
NPalopoli290 wrote:

PAUP can perform maximum-likelihood estimations on phylogenetic trees. You can save all output trees to a file using:

savetree file=output.phy format=phylip

where format=phylip is optional.

If you want to save a subset of the trees, add the arguments from and to; for example, from=1 to=1 will save the best tree only

ADD COMMENTlink written 6.4 years ago by NPalopoli290

Thanks but I think PAUP is paid. Do you know any free program which does this?

ADD REPLYlink modified 6.4 years ago • written 6.4 years ago by figo200
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