Entering edit mode
10.4 years ago
snp_cook12
•
0
Hi does anyone know of a program/software in R or python or even stand alone that checks concodance of genotypes in duplicate samples?
I have 1000 genotyped samples with 50 duplicates. I want to ensure that the genotypes called in each duplicate pair match up, and I want to find the rate of match and mismatch.
Anyone know of a tool that can do that?
what format is your data in?
these are bed and ped files generated for analysis in PLINK. thanks!