Question: Bam Files Of Exomes From 1000 Genomes Project
4
gravatar for Jorjial
7.7 years ago by
Jorjial270
Valencia, Spain
Jorjial270 wrote:

Hi everybody, I'm working with some exome sequencing data. I'd like to compare my results with data from 1000 genomes project. I have not found any public list of alignment files in bam format. But, if you browse the samples data directories in the FTP server, you can find some alignment files in bam format. For example, in this directory ftp://ftp.1000genomes.ebi.ac.uk/vol1...ome_alignment/. Does anyone know if these files are are the definitive ones? Or some of them are partial alignments and they are going to complete them? Thanks a lot! Jrg

genome exome alignment • 2.6k views
ADD COMMENTlink written 7.7 years ago by Jorjial270
1
gravatar for Jorjial
7.7 years ago by
Jorjial270
Valencia, Spain
Jorjial270 wrote:

This is the answer from the 1000 genomes project: "The exome BAMs you found on the ftp site are a part of the Phase I data. It is incomplete. Some samples don't have exome BAMs yet; some samples have BAMs but the BAM may be updated due to additional sequences are added in the future. "

ADD COMMENTlink written 7.7 years ago by Jorjial270
1

This is correct. The exome analysis pipeline only started running recently but we hope to release an alignment index which will describe the bams that will be used as part of the phase 1 analysis in the next month

ADD REPLYlink written 7.7 years ago by Laura1.7k

Laura, thanks for the information.

ADD REPLYlink written 7.7 years ago by Jorjial270
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