Genome Assembly +Annotation Pipeline
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10.6 years ago
HG ★ 1.2k

Hi everyone, I am beginners in genome assembly. I need to develop a genome assembly and annotation pipeline with existing third party program. Can anyone suggest me any idea : how i will start ??

pipeline assembly annotation • 3.4k views
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10.6 years ago

This is just personal preference, but I would do something like:

  1. ALLPATHS - or VELVET - or Your Favorite Assembler

  2. MAKER2 - http://www.biomedcentral.com/1471-2105/12/491

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10.6 years ago
PoGibas 5.1k

HG, whenever I need coding idea I just search it on Github, give it a try:
https://github.com/search?q=%22genome+assembly%22&ref=cmdform

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