Question: Visualization Software For Transmission And Emission Matrix For Hmm
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gravatar for user11235
5.4 years ago by
user1123530
user1123530 wrote:

Are there good visualization software for illustrated a colored transmission and emission matrix for Hidden Markov Models out there? If I have a text file with header and column names of hidden states and a list of decimal values for each transmission value between every two states, is there software that can turn this file into a matrix colored with different colors for different levels. For example, a small value <0.2 could be colored red, and a large value >0.8 could be colored blue...etc. And similarly for expression matrices.

hmm • 1.3k views
ADD COMMENTlink modified 5.4 years ago by Michael Dondrup46k • written 5.4 years ago by user1123530

Btw, what's the biological application?

ADD REPLYlink written 5.4 years ago by Michael Dondrup46k
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gravatar for Michael Dondrup
5.4 years ago by
Bergen, Norway
Michael Dondrup46k wrote:

You can try the functions heatmap and image in R, they do exactly that, heatmap also does hierarchical clustering, but this can be turned off.

ADD COMMENTlink written 5.4 years ago by Michael Dondrup46k
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