How To Define How Much Useful A Microarray/Gene Expression Dataset Is For Predicting A Go Term

Question

[mtyler.jason]

I have a dataset(microarray/gene expression). Each gene is associated to a protein and the protein has/hasn't a specific GO term as well. How can I know how much useful this microarray dataset is for predicting the GO term. Suggestions guys.

[Ashutosh Pandey]

Can you make your question more clear. What you mean by "protein has/hasn't a specific GO term as well" ?

[mtyler.jason]

I mean the protein associated with the gene either is associated/labeled with that GO term or not