I wonder how best I can visualize whole genome data of complete genomics. I tried to use VCF file but when I try to index it gives an error messages
It says - The provided VCF is malformed appx line 32: The VCF does not allow for white space in th eINFO field. Offending field value was DBSNP =6678138; SIFT_Function=tolerated------. When I manually removed this particular entry then it complains We never saw the reuired CHROM header line (starting with #) for the input VCF file.
Any suggestion or alternate of VCF visualization for complete genomics.