Looking For Microarray Datasets Of Both Mirna And Mrna Measurements For Any Type Of Cancer
2
1
Entering edit mode
8.0 years ago
Mandar ▴ 180

Can anybody give the the microarray dataset having expression of miRNA and mRNA both in any cancers.You can give me the accession NO. of GEO,arrayexpress etc.

microarray • 2.0k views
ADD COMMENT
0
Entering edit mode

You can find these by searching the databases, surely.

ADD REPLY
3
Entering edit mode
8.0 years ago
GANI ▴ 230

I think using the TCGA data is the best option as you get many samples with miRNA and mRNA expression. Check the following link to download the relevant data (i.e. Expression-Genes and Expression-miRNA). If you prefer miRNA microarray data, you can use data from Glioblastoma (GBM) or Serous Cystadenocarcinoma (OV), because you get expression through sequence data for other cancer types.

https://tcga-data.nci.nih.gov/tcga/dataAccessMatrix.htm

ADD COMMENT
0
Entering edit mode
7.9 years ago
lsp03yjh ▴ 810

You can use starBase Pan-Cancer Analysis Platform. starBase Pan-Cancer Analysis Platform is designed for deciphering Pan-Cancer Networks of lncRNAs, miRNAs, ceRNAs and RNA-binding proteins (RBPs) by mining clinical and expression profiles of 14 cancer types (>6000 samples) from The Cancer Genome Atlas (TCGA) Data Portal (all data available without limitations).

starBase generated Pan-Cancer networks of CLIP-Seq experimentally supported miRNA-lncRNA and miRNA-mRNA interactions.

Pan-Cancer miRNA-mRNA interactions can be available at http://starbase.sysu.edu.cn/targetSite.php

ADD COMMENT

Login before adding your answer.

Traffic: 3523 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6