Question: (Closed) Jointly Detect Somatic Copy Number Variations
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lyz10302012 • 310 wrote:
Hi,
Is there any good tools to jointly detect somatic copy number variations (like some tools for SNVs) from tumor-normal paired sequencing data? If not, how can I detect somatic copy number variations using existing common CNV detecting tools?
Thanks
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modified 5.0 years ago
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Chris Miller ♦ 20k
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5.0 years ago by
lyz10302012 • 310
Did you read?
what are the 'copy number detection' tools out there for exome capture NGS data.
Copy Number Variation (CNV) detection using single-end sequencing data
Copy number variation tools for illumina HiSeq paired end data (whole genome)?
What is the best pipeline for human whole exome sequencing?
Detection of Copy Number Variation between two groups using whole-genome NGS paired reads and so on.
Closing this question, as there are many existing threads that answer exactly this query, some of which are linked by Jimbou below.