Question

Transcription Factor Dna-Binding Sites

1

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10.2 years ago

ddr.dnl ▴ 10

Is there a database with the transcription factor DNA-binding sites for the transcription factors in drosophila?

dna • 3.8k views

ADD COMMENT • link updated 7.5 years ago by lsp03yjh ▴ 860 • written 10.2 years ago by ddr.dnl ▴ 10

score 3 · Answer 1 · 2014-02-28

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10.2 years ago

UnivStudent ▴ 430

You could probably find some of the resources on the Fly Factor Survey website. Specifically with their Genome Surveyor and other linked tools.

ADD COMMENT • link 10.2 years ago by UnivStudent ▴ 430

score 1 · Answer 2 · 2016-10-15

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7.5 years ago

lsp03yjh ▴ 860

You can use ChIPBase database to discovering transcription factor binding motifs, profiles and targets from ~10,200 curated peak datasets derived from ChIP-seq methods in 10 species(Human, Mouse, Fruitfly, Worm, A. Thaliana, Yeast, Rat, Zebrafish, X. tropicalis, Chicken).

ADD COMMENT • link 7.5 years ago by lsp03yjh ▴ 860

score 0 · Answer 3 · 2014-02-28

Genomatix is a paid data-base that has this information. I believe there is a program called Match. The link provided points to a page that has the information about many programs. You need to register, and you can use the "free" version of the program on the website. If you need to do anything more you need subscription to Biobase or Genomatix.