Is there a software for genomic calculation of GC content and Gene density under sliding windows?

Question

[weishang]

Is there a software for genomic calculation of GC content and Gene density under sliding windows?

[ATpoint]

What is "genomic statistical calculation of GC content "? So just determining the GC content?

E.g. make the sliding windows with bedtools makewindows (this gives you a BED file), and then together with a fasta file of the genome use: A: Calculating Gc Content For All Ccds

[weishang]

Yes I mean GC content, sorry for the mistake, I have just remove that word.

[ATpoint]

Ok, no problem. Does the suggested solution make sense to you or do you need something else?

[weishang]

Yes, the gene density under sliding windows

[ATpoint]

I would probably intersect the sliding window BED file with a BED file that contains only the TSS (transcription start site) coordinates of every gene (or rather transcript), e.g. bedtools intersect and from this make the calculation.