MSI cslculation
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6 months ago

Dear Biostars Community,

I'm currently working on a project that requires calculation of microsatellite instability using NGS.

I'm wondering if there is a way (or tool) to calculate msi using a tumor-sample-only annotation json with its coverage bed?

Many thanks

bed sequencing annotation • 270 views
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I would say you still need a BAM file with the alignment.

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