Extract MAF for vcf file
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6 months ago
Sumeet • 0

Hi All,

I have a vcf file and would like to extract MAF from dbSNP corresponding to each SNP from the vcf file. Doing it one by one would take ages. Any suggestions?

vcf MAF • 360 views
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Entering edit mode
6 months ago

convert the dbsnp to CHROM POS REF ALT MAF using bcftools query and then use bcftools annotate to transfert the dbsnp table to your vcf.

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