How to add rs ID to SNP dosage file
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Entering edit mode
13 months ago
salman_96 ▴ 50

Hi I have two files. One is a .ped file that looks like this

FamilyID indivID 0 0 2 1 2 1 2 1 2 2 2 .... 
FamilyID indivID 0 0 2 1 2 1 2 2 1 2 1 ....

I prepared this file by adding --recode 12 to change dosage to 1 2 0 from A/G/T/A

I also have SNPs information in .bim and .map files.

I want to make a file that has both rsIDs and dosage information and should look like this.

ID   rs12345    rs12345 .......................
1    2                2           .......................
2    1                1           .......................
3    2                2           .......................
4    1                1           .......................
5    2                2
6    1                1           ......................

And the list goes on,

Best regards, Salman

SNPs Plink rsID • 325 views
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