Hi, I am newbie in CNVKit
I want to analyse clinical exome panel sample in CNVkit to detect copy number variants. When I tried with bed file that include 113k row, I get 60k targeted CNV. When I filter the result according to log2 ratio and morbid genes, I get 20k result.
I confused about the number of CNV. I don't believe the trustability of my results. Can anyone say something about it?