OMA output document error
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Entering edit mode
14 months ago
Yong • 0

Hi all, I tried to use OMA to screen homologous genes, but there was a problem during the operation. I found out that outgroupspecies needs to be established when using OMA. I tried to select multiple different outgroupspecies, but the following error occurred.Can you give me a little detailed guidance?

...... 271 orthologous groups after Filtering=BestDimless, AveVarWeighted, Class dimensionless fitting index 3.116 Error, (in RerootWithOutgroups) defined outgroup set does not form a monophyletic clade

OMA output document error • 452 views
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Entering edit mode
7 months ago

Hi,

It seems that your outgroup set of species is not monophyletic (https://en.wikipedia.org/wiki/Monophyly). Can you provide a bit more of information about your OMA inputs/parameters in order to help you find a valid outgroup ?

Thx, Clement

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