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3.0 years ago
mtavakoli4030
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10
my gffcompare output gtf file is like that. one complete row is followed by some uncomplete row which has not class codes. ?
NC_001711.1 StringTie transcript 1004 16642 . + . transcript_id "unknown_transcript_1"; gene_id "MSTRG.7"; xloc "XLOC_000011"; ref_gene_id ""; cmp_ref "unknown_transcript_1"; class_code "j"; tss_id "TSS1";
NC_001711.1 StringTie exon 1004 4890 . + . transcript_id "unknown_transcript_1"; gene_id "MSTRG.7"; exon_number "1";
NC_001711.1 StringTie exon 4958 6147 . + . transcript_id "unknown_transcript_1"; gene_id "MSTRG.7"; exon_number "2";
NC_001711.1 StringTie exon 6468 8018 . + . transcript_id "unknown_transcript_1"; gene_id "MSTRG.7"; exon_number "3";
NC_001711.1 StringTie exon 8094 8166 . + . transcript_id "unknown_transcript_1"; gene_id "MSTRG.7"; exon_number "4";
NC_001711.1 StringTie exon 8181 14770 . + . transcript_id "unknown_transcript_1"; gene_id "MSTRG.7"; exon_number "5";
NC_001711.1 StringTie exon 15361 16642 . + . transcript_id "unknown_transcript_1"; gene_id "MSTRG.7"; exon_number "6";
NC_001711.1 StringTie transcript 4888 16642 . - . transcript_id "unknown_transcript_1"; gene_id "MSTRG.8"; xloc "XLOC_000002"; ref_gene_id ""; cmp_ref "unknown_transcript_1"; class_code "j"; tss_id "TSS2";
NC_001711.1 StringTie exon 4888 4958 . - . transcript_id "unknown_transcript_1"; gene_id "MSTRG.8"; exon_number "1";
NC_001711.1 StringTie exon 6149 6291 . - . transcript_id "unknown_transcript_1"; gene_id "MSTRG.8"; exon_number "2";
NC_001711.1 StringTie exon 6329 6466 . - . transcript_id "unknown_transcript_1"; gene_id "MSTRG.8"; exon_number "3";
NC_001711.1 StringTie exon 8019 8089 . - . transcript_id "unknown_transcript_1"; gene_id "MSTRG.8"; exon_number "4";
NC_001711.1 StringTie exon 14767 15357 . - . transcript_id "unknown_transcript_1"; gene_id "MSTRG.8"; exon_number "5";
NC_001711.1 StringTie exon 16573 16642 . - . transcript_id "unknown_transcript_1"; gene_id "MSTRG.8"; exon_number "6";
NC_035077.1 StringTie transcript 26931 49263 . + . transcript_id "XM_021602508.1"; gene_id "MSTRG.1"; gene_name "LOC110523613"; xloc "XLOC_000003"; ref_gene_id "LOC110523613"; cmp_ref "XM_021602508.1"; class_code "="; tss_id "TSS3";