my gffcompare out put gtf file is like that. on complete row is followed by some uncomplete row wich have not class codes.
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24 days ago

my gffcompare output gtf file is like that. one complete row is followed by some uncomplete row which has not class codes. ?

NC_001711.1 StringTie   transcript  1004    16642   .   +   .   transcript_id "unknown_transcript_1"; gene_id "MSTRG.7"; xloc "XLOC_000011"; ref_gene_id ""; cmp_ref "unknown_transcript_1"; class_code "j"; tss_id "TSS1";
NC_001711.1 StringTie   exon    1004    4890    .   +   .   transcript_id "unknown_transcript_1"; gene_id "MSTRG.7"; exon_number "1";
NC_001711.1 StringTie   exon    4958    6147    .   +   .   transcript_id "unknown_transcript_1"; gene_id "MSTRG.7"; exon_number "2";
NC_001711.1 StringTie   exon    6468    8018    .   +   .   transcript_id "unknown_transcript_1"; gene_id "MSTRG.7"; exon_number "3";
NC_001711.1 StringTie   exon    8094    8166    .   +   .   transcript_id "unknown_transcript_1"; gene_id "MSTRG.7"; exon_number "4";
NC_001711.1 StringTie   exon    8181    14770   .   +   .   transcript_id "unknown_transcript_1"; gene_id "MSTRG.7"; exon_number "5";
NC_001711.1 StringTie   exon    15361   16642   .   +   .   transcript_id "unknown_transcript_1"; gene_id "MSTRG.7"; exon_number "6";
NC_001711.1 StringTie   transcript  4888    16642   .   -   .   transcript_id "unknown_transcript_1"; gene_id "MSTRG.8"; xloc "XLOC_000002"; ref_gene_id ""; cmp_ref "unknown_transcript_1"; class_code "j"; tss_id "TSS2";
NC_001711.1 StringTie   exon    4888    4958    .   -   .   transcript_id "unknown_transcript_1"; gene_id "MSTRG.8"; exon_number "1";
NC_001711.1 StringTie   exon    6149    6291    .   -   .   transcript_id "unknown_transcript_1"; gene_id "MSTRG.8"; exon_number "2";
NC_001711.1 StringTie   exon    6329    6466    .   -   .   transcript_id "unknown_transcript_1"; gene_id "MSTRG.8"; exon_number "3";
NC_001711.1 StringTie   exon    8019    8089    .   -   .   transcript_id "unknown_transcript_1"; gene_id "MSTRG.8"; exon_number "4";
NC_001711.1 StringTie   exon    14767   15357   .   -   .   transcript_id "unknown_transcript_1"; gene_id "MSTRG.8"; exon_number "5";
NC_001711.1 StringTie   exon    16573   16642   .   -   .   transcript_id "unknown_transcript_1"; gene_id "MSTRG.8"; exon_number "6";
NC_035077.1 StringTie   transcript  26931   49263   .   +   .   transcript_id "XM_021602508.1"; gene_id "MSTRG.1"; gene_name "LOC110523613"; xloc "XLOC_000003"; ref_gene_id "LOC110523613"; cmp_ref "XM_021602508.1"; class_code "="; tss_id "TSS3";
gffcompare rna lncrna gtf • 233 views
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