I have the reads of the some mammals intestinal microflora. I mapped the reads to the bacteria genomes. And I want to use the rest of reads that are not mapped to do something. I want build some new genomes of bacterium. Can you give me some advice for: 1.how to build some new genomes of bacterium? 2.can I use the rest of the reads to do other things? Thanks!
1.Do some assembly。 2.Map to nt/nt database for classfication.