Does anyone know how to import 1000 Genomes Project VCF files into usegalaxy.org?
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3.1 years ago
screadore ▴ 20

Hello everyone,

I'm trying to use the 30X GrCH38 VCF files in the 1000 Genomes project, but unfortunately they only provide them in separate individual chromosome vcf files. So I have to concatenate them and then I can use them as a control group against my own samples.

I need roughly 200 vcf files in total.

If anyone has any input on how to go about this or if anyone knows how I can achieve this through an alternative route I'd greatly appreciate any help. Thank you.

1000genomes concatenatr vcf galaxy • 760 views
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3.1 years ago
GenoMax 142k

You should ask this question on Galaxy support forum to get prompt galaxy specific help : https://help.galaxyproject.org/

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Thank you I didn't even know they had one. I appreciate it.

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