Warning messages: In svgStyleAttributes(style, svgdev) : Removing non-SVG style attribute name(s): subscripts, group.number, group.value
0
0
Entering edit mode
6 months ago
xxxxxxxx ▴ 20

script-

 arrayQualityMetrics(expressionset = raw_data,
+                     outdir = tempdir(),
+                     force = TRUE, do.logtransform = TRUE,
+                     intgroup = c("Factor.Value..COMPOUND.", "Factor.Value..GENOTYPE."))

Getting this type of warning-

The report will be written into directory 'C:\Users\AppData\Local\Temp\RtmpOwGw0M'. 
Warning messages:
1: In svgStyleAttributes(style, svgdev) :
  Removing non-SVG style attribute name(s): subscripts, group.number, group.value
2: In svgStyleAttributes(style, svgdev) :
  Removing non-SVG style attribute name(s): subscripts, group.number, group.value
3: In svgStyleAttributes(style, svgdev) :
  Removing non-SVG style attribute name(s): subscripts, group.number, group.value
4: In svgStyleAttributes(style, svgdev) :
  Removing non-SVG style attribute name(s): subscripts, group.number, group.value
5: In svgStyleAttributes(style, svgdev) :
  Removing non-SVG style attribute name(s): subscripts, group.number, group.value
6: In svgStyleAttributes(style, svgdev) :
  Removing non-SVG style attribute name(s): subscripts, group.number, group.value
7: In svgStyleAttributes(style, svgdev) :
  Removing non-SVG style attribute name(s): subscripts, group.number, group.value
8: In svgStyleAttributes(style, svgdev) :
  Removing non-SVG style attribute name(s): subscripts, group.number, group.value
9: In svgStyleAttributes(style, svgdev) :
  Removing non-SVG style attribute name(s): subscripts, group.number, group.value

What does it mean?

rstudio r arrayexpress microarray • 767 views
ADD COMMENT
1
Entering edit mode
ADD REPLY
0
Entering edit mode
res = aqm.writereport(modules = qm, arrayTable = preparedData$pData, 
+                       reporttitle = reportTitle  , outdir = tempdir())

Still getting same warning-

Warning messages:
1: In svgStyleAttributes(style, svgdev) :
  Removing non-SVG style attribute name(s): subscripts, group.number, group.value
2: In svgStyleAttributes(style, svgdev) :
  Removing non-SVG style attribute name(s): subscripts, group.number, group.value
3: In svgStyleAttributes(style, svgdev) :
  Removing non-SVG style attribute name(s): subscripts, group.number, group.value
4: In svgStyleAttributes(style, svgdev) :
  Removing non-SVG style attribute name(s): subscripts, group.number, group.value
5: In svgStyleAttributes(style, svgdev) :
  Removing non-SVG style attribute name(s): subscripts, group.number, group.value
6: In svgStyleAttributes(style, svgdev) :
  Removing non-SVG style attribute name(s): subscripts, group.number, group.value
7: In svgStyleAttributes(style, svgdev) :
  Removing non-SVG style attribute name(s): subscripts, group.number, group.value
8: In svgStyleAttributes(style, svgdev) :
  Removing non-SVG style attribute name(s): subscripts, group.number, group.value
9: In svgStyleAttributes(style, svgdev) :
  Removing non-SVG style attribute name(s): subscripts, group.number, group.value
ADD REPLY
0
Entering edit mode

what version of arrayQualityMetrics are you using?

ADD REPLY
0
Entering edit mode

arrayQualityMetrics version- 3.47.0

ADD REPLY
0
Entering edit mode

what is the meaning of these warnings? How can I fix it?

ADD REPLY
0
Entering edit mode

No idea - you might want to contact bioconductor support or something.

ADD REPLY

Login before adding your answer.

Traffic: 2039 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6