Hello, I'm having some trouble with making heatmaps from deeptools, where the colors don't seem to be displayed properly. I would like to make metagene plots using bigwig files from a chip-seq experiment. When I generate the bigwig files using bamCompare, the downstream heatmaps look fine; but if I use bamCoverage, most of the heatmap tends to be white (see attached image for an example). Playing with zMin zMax doesn't seem to help.
Any suggestions would be greatly appreciated~! Thanks!