samtools mpileup: error CRC32 failure
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3 months ago
lz1903 • 0

Hi,

I just have a stupid question. I am using samtools mpileup to do base call. Here is my command,

samtools mpileup -f *.fa -l *.bed *1.bam *2.bam > *.txt

I got error CRC32 failure which I have no clue. I think it could due to the bed file. I may not have good format. But I went through samtools page and didn't find any explaination about file format.

My bed file looks like this:

chr4    59436   59436
chr3    382506  382506
sequencing SNP genome next-gen gene • 129 views
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run samtools quickcheck *1.bam *2.bam && echo SUCCESS to test your input.

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