I just have a stupid question. I am using samtools mpileup to do base call. Here is my command,
samtools mpileup -f *.fa -l *.bed *1.bam *2.bam > *.txt
I got error CRC32 failure which I have no clue. I think it could due to the bed file. I may not have good format. But I went through samtools page and didn't find any explaination about file format.
My bed file looks like this:
chr4 59436 59436 chr3 382506 382506