Duplicate ID in plink
0
0
Entering edit mode
3 months ago
xxx@ubuntu:~/Biosoft/plink$ ./plink \
> --bfile ~/lcj/bc_anhui/PLINK-Data/breast-qc \
> --clump-p1 1 \
> --clump-r2 0.1 \
> --clump-kb 250 \
> --clump ~/lcj/bc_anhui/PLINK-Data/breast2.assoc \
> --clump-snp-field SNP \
> --clump-field P \
> --out breast-anhui

It returns an error

Error: Duplicate ID 'rs3737665'.

I dont know how to find and remove the duplicate ID. Thank you.

GWAS plink • 146 views
ADD COMMENT
0
Entering edit mode
ADD REPLY

Login before adding your answer.

Traffic: 1144 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6