I am trying out the cnvkit genemetrics function. When I check the help file with
cnvkit.py genemetrics -h
, there is a whole range of statistical output options available such as --ttest.
How do we get the output for this T-test? I tried :
cnvkit.py genemetrics input.cnr -o output.txt --ttest
The output I got is the same as without --ttest.