Deleted:Define the group of sample in DESeq2
0
1
Entering edit mode
4 months ago
abhisek061 ▴ 30

Sorry, sir pardon me I'm deleting this post due to put my own work in public platform. I get the result also in DESeq2 for Differential gene expression with this command but I can not define a class of sample in the script could anyone write the DESeq2 code? For reference, I want to say I have 9 samples 3 for each ( A1, A2, A3, B1, B2, B3, C1, C2, C3) I want to get differentially genes between A and C sample. Thanks!

dds <- DESeq(DESeq.md)

Edit by ATpoint (content ported from a duplicate question):

> resultsNames(dds)
[1] "Intercept"          "condition_LD_vs_CK" "condition_MD_vs_CK"
> head(res)
log2 fold change (MLE): condition MD vs CK 
Wald test p-value: condition MD vs CK 
DataFrame with 6 rows and 6 columns
DESeq2 R RNA-seq • 446 views
ADD COMMENT
This thread is not open. No new answers may be added
Traffic: 1999 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6