Deleted:Define the group of sample in DESeq2
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Entering edit mode
4 months ago
abhisek061 ▴ 30

Sorry, sir pardon me I'm deleting this post due to put my own work in public platform. I get the result also in DESeq2 for Differential gene expression with this command but I can not define a class of sample in the script could anyone write the DESeq2 code? For reference, I want to say I have 9 samples 3 for each ( A1, A2, A3, B1, B2, B3, C1, C2, C3) I want to get differentially genes between A and C sample. Thanks!

dds <- DESeq(DESeq.md)


Edit by ATpoint (content ported from a duplicate question):

> resultsNames(dds)
[1] "Intercept"          "condition_LD_vs_CK" "condition_MD_vs_CK"
log2 fold change (MLE): condition MD vs CK
Wald test p-value: condition MD vs CK
DataFrame with 6 rows and 6 columns

DESeq2 R RNA-seq • 446 views