somatic variant calling
0
0
Entering edit mode
19 months ago
Elisa • 0

Hi everyone,

I'm dealing with a targeted genome sequencing on ovarian tumor samples. I'd like to know which tool should I use to perform variant calling and which one to annotate variants?

Thanks in advance

Variant calling • 354 views
ADD COMMENT
0
Entering edit mode

How about the nextflow pipeline sarek which does all that.

https://github.com/nf-core/sarek

ADD REPLY

Login before adding your answer.

Traffic: 1372 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6