Entering edit mode
2.8 years ago
BATMAN
•
0
Hi, I would like to know how I can index a genome.gff file to visualize it in Artemis. The .gff file was generated with prokka.
I have tried:
(grep ^"#" WT.gff; grep -v ^"#" WT.gff | grep -v "^$" | grep "\t" | sort -k1,1 -k4,4n) > WT.sorted.gff
bgzip WT.sorted.gff
tabix -p gff WT.sorted.gff.gz
and nothing.
I also tried:
gt gff3 -sortlines WT.gff > WT.sorted.gff
bgzip WT.sorted.gff
tabix -p gff WT.sorted.gff.gz
and nothing either.
Help! All the best